# The content of this file was generated using the Python profile of libCellML 0.5.0. from enum import Enum from math import * __version__ = "0.4.0" LIBCELLML_VERSION = "0.5.0" STATE_COUNT = 4 VARIABLE_COUNT = 48 class VariableType(Enum): VARIABLE_OF_INTEGRATION = 0 STATE = 1 CONSTANT = 2 COMPUTED_CONSTANT = 3 ALGEBRAIC = 4 VOI_INFO = {"name": "t", "units": "second", "component": "GLUT2_BG", "type": VariableType.VARIABLE_OF_INTEGRATION} STATE_INFO = [ {"name": "q_1", "units": "fmol", "component": "GLUT2_BG", "type": VariableType.STATE}, {"name": "q_2", "units": "fmol", "component": "GLUT2_BG", "type": VariableType.STATE}, {"name": "q_3", "units": "fmol", "component": "GLUT2_BG", "type": VariableType.STATE}, {"name": "q_4", "units": "fmol", "component": "GLUT2_BG", "type": VariableType.STATE} ] VARIABLE_INFO = [ {"name": "q_init_Ao", "units": "fmol", "component": "params_BG", "type": VariableType.COMPUTED_CONSTANT}, {"name": "g_o", "units": "mM", "component": "params_BG", "type": VariableType.CONSTANT}, {"name": "V_o", "units": "pL", "component": "params_BG", "type": VariableType.CONSTANT}, {"name": "q_init_Ai", "units": "fmol", "component": "params_BG", "type": VariableType.COMPUTED_CONSTANT}, {"name": "g_i", "units": "mM", "component": "params_BG", "type": VariableType.CONSTANT}, {"name": "V_i", "units": "pL", "component": "params_BG", "type": VariableType.CONSTANT}, {"name": "R", "units": "J_per_K_mol", "component": "params_BG", "type": VariableType.CONSTANT}, {"name": "T", "units": "kelvin", "component": "params_BG", "type": VariableType.CONSTANT}, {"name": "K_Ai", "units": "per_fmol_1", "component": "params_BG", "type": VariableType.CONSTANT}, {"name": "K_Ao", "units": "per_fmol_1", "component": "params_BG", "type": VariableType.CONSTANT}, {"name": "K_1", "units": "per_fmol_1", "component": "params_BG", "type": VariableType.CONSTANT}, {"name": "q_init_1", "units": "fmol", "component": "params_BG", "type": VariableType.CONSTANT}, {"name": "K_2", "units": "per_fmol_1", "component": "params_BG", "type": VariableType.CONSTANT}, {"name": "q_init_2", "units": "fmol", "component": "params_BG", "type": VariableType.CONSTANT}, {"name": "K_3", "units": "per_fmol_1", "component": "params_BG", "type": VariableType.CONSTANT}, {"name": "q_init_3", "units": "fmol", "component": "params_BG", "type": VariableType.CONSTANT}, {"name": "K_4", "units": "per_fmol_1", "component": "params_BG", "type": VariableType.CONSTANT}, {"name": "q_init_4", "units": "fmol", "component": "params_BG", "type": VariableType.CONSTANT}, {"name": "kappa_r1", "units": "fmol_per_s_1", "component": "params_BG", "type": VariableType.CONSTANT}, {"name": "kappa_r2", "units": "fmol_per_s_1", "component": "params_BG", "type": VariableType.CONSTANT}, {"name": "kappa_r3", "units": "fmol_per_s_1", "component": "params_BG", "type": VariableType.CONSTANT}, {"name": "kappa_r4", "units": "fmol_per_s_1", "component": "params_BG", "type": VariableType.CONSTANT}, {"name": "mu_Ai", "units": "J_per_mol", "component": "GLUT2_BG", "type": VariableType.COMPUTED_CONSTANT}, {"name": "q_Ai", "units": "fmol", "component": "GLUT2_BG", "type": VariableType.COMPUTED_CONSTANT}, {"name": "mu_Ao", "units": "J_per_mol", "component": "GLUT2_BG", "type": VariableType.COMPUTED_CONSTANT}, {"name": "q_Ao", "units": "fmol", "component": "GLUT2_BG", "type": VariableType.COMPUTED_CONSTANT}, {"name": "mu_1", "units": "J_per_mol", "component": "GLUT2_BG", "type": VariableType.ALGEBRAIC}, {"name": "v_1", "units": "fmol_per_s", "component": "GLUT2_BG", "type": VariableType.ALGEBRAIC}, {"name": "mu_2", "units": "J_per_mol", "component": "GLUT2_BG", "type": VariableType.ALGEBRAIC}, {"name": "v_2", "units": "fmol_per_s", "component": "GLUT2_BG", "type": VariableType.ALGEBRAIC}, {"name": "mu_3", "units": "J_per_mol", "component": "GLUT2_BG", "type": VariableType.ALGEBRAIC}, {"name": "v_3", "units": "fmol_per_s", "component": "GLUT2_BG", "type": VariableType.ALGEBRAIC}, {"name": "mu_4", "units": "J_per_mol", "component": "GLUT2_BG", "type": VariableType.ALGEBRAIC}, {"name": "v_4", "units": "fmol_per_s", "component": "GLUT2_BG", "type": VariableType.ALGEBRAIC}, {"name": "v_r1", "units": "fmol_per_s", "component": "GLUT2_BG", "type": VariableType.ALGEBRAIC}, {"name": "A_f_r1", "units": "J_per_mol", "component": "GLUT2_BG", "type": VariableType.ALGEBRAIC}, {"name": "A_r_r1", "units": "J_per_mol", "component": "GLUT2_BG", "type": VariableType.ALGEBRAIC}, {"name": "v_r2", "units": "fmol_per_s", "component": "GLUT2_BG", "type": VariableType.ALGEBRAIC}, {"name": "A_f_r2", "units": "J_per_mol", "component": "GLUT2_BG", "type": VariableType.ALGEBRAIC}, {"name": "A_r_r2", "units": "J_per_mol", "component": "GLUT2_BG", "type": VariableType.ALGEBRAIC}, {"name": "v_r3", "units": "fmol_per_s", "component": "GLUT2_BG", "type": VariableType.ALGEBRAIC}, {"name": "A_f_r3", "units": "J_per_mol", "component": "GLUT2_BG", "type": VariableType.ALGEBRAIC}, {"name": "A_r_r3", "units": "J_per_mol", "component": "GLUT2_BG", "type": VariableType.ALGEBRAIC}, {"name": "v_r4", "units": "fmol_per_s", "component": "GLUT2_BG", "type": VariableType.ALGEBRAIC}, {"name": "A_f_r4", "units": "J_per_mol", "component": "GLUT2_BG", "type": VariableType.ALGEBRAIC}, {"name": "A_r_r4", "units": "J_per_mol", "component": "GLUT2_BG", "type": VariableType.ALGEBRAIC}, {"name": "v_Ai", "units": "fmol_per_s", "component": "GLUT2_BG", "type": VariableType.ALGEBRAIC}, {"name": "v_Ao", "units": "fmol_per_s", "component": "GLUT2_BG", "type": VariableType.ALGEBRAIC} ] def create_states_array(): return [nan]*STATE_COUNT def create_variables_array(): return [nan]*VARIABLE_COUNT def initialise_variables(states, rates, variables): variables[1] = 1.0e-5 variables[2] = 0.09 variables[4] = 10.0 variables[5] = 0.09 variables[6] = 8.31 variables[7] = 273.15 variables[8] = 149.65 variables[9] = 149.65 variables[10] = 33.20 variables[11] = 0.0017 variables[12] = 4.25e+03 variables[13] = 0.0017 variables[14] = 344.59 variables[15] = 0.0017 variables[16] = 1.99 variables[17] = 0.0017 variables[18] = 0.36 variables[19] = 0.26 variables[20] = 1.01e+05 variables[21] = 1.01e+04 states[0] = variables[11] states[1] = variables[13] states[2] = variables[15] states[3] = variables[17] def compute_computed_constants(variables): variables[0] = variables[1]*variables[2] variables[3] = variables[4]*variables[5] variables[22] = variables[6]*variables[7]*log(variables[8]*variables[23]) variables[23] = variables[3] variables[24] = variables[6]*variables[7]*log(variables[9]*variables[25]) variables[25] = variables[0] def compute_rates(voi, states, rates, variables): variables[32] = variables[6]*variables[7]*log(variables[16]*states[3]) variables[35] = variables[32] variables[26] = variables[6]*variables[7]*log(variables[10]*states[0]) variables[36] = variables[26] variables[34] = variables[18]*(exp(variables[35]/(variables[6]*variables[7]))-exp(variables[36]/(variables[6]*variables[7]))) variables[28] = variables[6]*variables[7]*log(variables[12]*states[1]) variables[42] = variables[28] variables[41] = variables[24]+variables[26] variables[40] = variables[20]*(exp(variables[41]/(variables[6]*variables[7]))-exp(variables[42]/(variables[6]*variables[7]))) variables[27] = variables[34]-variables[40] rates[0] = variables[27] variables[38] = variables[28] variables[30] = variables[6]*variables[7]*log(variables[14]*states[2]) variables[39] = variables[30] variables[37] = variables[19]*(exp(variables[38]/(variables[6]*variables[7]))-exp(variables[39]/(variables[6]*variables[7]))) variables[29] = variables[40]-variables[37] rates[1] = variables[29] variables[44] = variables[30] variables[45] = variables[22]+variables[32] variables[43] = variables[21]*(exp(variables[44]/(variables[6]*variables[7]))-exp(variables[45]/(variables[6]*variables[7]))) variables[31] = variables[37]-variables[43] rates[2] = variables[31] variables[33] = variables[43]-variables[34] rates[3] = variables[33] def compute_variables(voi, states, rates, variables): variables[26] = variables[6]*variables[7]*log(variables[10]*states[0]) variables[28] = variables[6]*variables[7]*log(variables[12]*states[1]) variables[30] = variables[6]*variables[7]*log(variables[14]*states[2]) variables[32] = variables[6]*variables[7]*log(variables[16]*states[3]) variables[35] = variables[32] variables[36] = variables[26] variables[34] = variables[18]*(exp(variables[35]/(variables[6]*variables[7]))-exp(variables[36]/(variables[6]*variables[7]))) variables[38] = variables[28] variables[39] = variables[30] variables[37] = variables[19]*(exp(variables[38]/(variables[6]*variables[7]))-exp(variables[39]/(variables[6]*variables[7]))) variables[42] = variables[28] variables[41] = variables[24]+variables[26] variables[40] = variables[20]*(exp(variables[41]/(variables[6]*variables[7]))-exp(variables[42]/(variables[6]*variables[7]))) variables[44] = variables[30] variables[45] = variables[22]+variables[32] variables[43] = variables[21]*(exp(variables[44]/(variables[6]*variables[7]))-exp(variables[45]/(variables[6]*variables[7]))) variables[46] = variables[43] variables[47] = -variables[40] variables[27] = variables[34]-variables[40] variables[29] = variables[40]-variables[37] variables[31] = variables[37]-variables[43] variables[33] = variables[43]-variables[34]